QuickBooks Commerce, the product Intuit built from its TradeGecko acquisition, stopped being available on August 31, 2023. Intuit’s own community team stated it directly: the company decided to focus on integrating ecommerce capabilities directly within QuickBooks Online and discontinued QuickBooks Commerce as a standalone product on that date. What replaced it is not one product. It is three or four, split along lines QuickBooks Commerce did not have, and sellers who migrated found that out the expensive way.
What went away
QuickBooks Commerce bundled several jobs into one subscription: multi-channel order management, inventory across locations, purchase order and supplier management, and B2B wholesale ordering, all tied to QuickBooks Online.
The scope of the loss is documented in Intuit’s own forum. When a user asked in September 2024 whether the full experience was coming back, a QuickBooks community responder answered that reintroducing inventory, supplier, and purchase order management is unavailable, and recommended exploring a third-party integration app.
That answer is the whole story. QuickBooks Online absorbed the accounting side, which is payouts from connected sales channels. The operational side, meaning stock, suppliers, and purchase orders, went to the app ecosystem. There is an earlier round of this too: Intuit had already retired the standalone TradeGecko product before folding what remained into a QuickBooks Online bundle, so the 2023 shutdown was the second time the same customers were moved.
A2X: the accounting slice, cleanly
A2X took the narrowest slice and does it well. It converts marketplace settlements into summarized journal entries and posts them to QuickBooks Online, Xero, or NetSuite. It calculates cost of goods sold per SKU per payout and posts an entry moving cost from the inventory asset account to COGS.
Pricing is per channel and per volume, starting at $29 a month for Amazon, Shopify, Etsy, eBay, or PayPal, and $79 for Walmart. The Amazon ladder runs through fourteen tiers to $1,499 at 250,000 orders a month. A multi-channel subscription starts at $89 for two channels at 1,000 combined orders and reaches $229 for five channels at 10,000. Every plan includes a 30-minute onboarding session; premium plans get 60 minutes.
What it does not replace: purchase orders, supplier management, stock levels, or order routing. A2X is deliberately an accounting connector, and pretending otherwise is how people end up disappointed. Its Mini plan at $29 does not include COGS at all, which is worth knowing before you buy the cheapest tier expecting gross profit.
Where A2X beats both of the others: price and NetSuite. There is no $29 or $59 entry point on either of the other two, and neither posts to NetSuite. A single-channel seller under 1,000 orders a month pays $59 for A2X Starter with COGS included, and nothing else on this list comes close.
Webgility: the closest thing to the operational half
Webgility is the nearest structural replacement for what QuickBooks Commerce did, because it covers order management alongside accounting. Its higher tiers sync purchase orders, handle dropshipping workflows, create and sync offline orders, apply flexible pricing and inventory rules, map units of measure, and do bidirectional customer sync. B2B features include purchase order numbers on wholesale orders, payment terms, invoice payments syncing both ways, and accounts receivable automation on Shopify.
Pricing splits by accounting platform. On QuickBooks Online or Xero: Pro at $69 a month annually or $79 monthly for 300 orders and two channels, Advanced at $129 or $149 for 800 orders with the B2B features, and Complete at $299 or $349 for 1,500 orders with reconciliation and month-end close. On QuickBooks Enterprise: Advanced at $199 or $249, Premium at $399 or $499 with Amazon FBA inventory reconciliation and shipping included, and Complete at $599 or $749 for 5,000 orders across five channels. An Intuit Enterprise Suite track sits between them. Add-ons include $20 per extra sales channel, $200 for historical data migration, $50 a month for shipping automation, $99 a month for EDI, and $149 a month per additional entity.
A full service bookkeeping engagement runs from $649 a month with the platform included, covering payout reconciliation, inventory reconciliation and COGS review, accounts payable, payroll, sales tax filing, and a 13-week cash forecast.
Where Webgility beats both of the others: order management and B2B. Neither of the other two syncs wholesale purchase order numbers, handles payment terms, or runs dropshipping workflows. For a seller who used QuickBooks Commerce primarily for B2B ordering, this is the only one of the three that addresses it.
ConnectBooks: the inventory and ledger-choice slice
ConnectBooks covers Amazon, Shopify, Walmart, eBay, and TikTok Shop, posting to QuickBooks Online, QuickBooks Desktop Enterprise, or Xero. Published starting prices are $149 for Gold, $199 for Diamond, and $349 for Platinum, with pricing varying by monthly order volume.
Gold sends a summary sync with net profit and COGS per SKU inside the platform. Diamond pushes SKU-level detail into QuickBooks with landed costs, group items, and multipacks. Platinum adds the inventory layer: multiple warehouse tracking, inventory turnover ratio, real inventory age, forecasting, an AI bill reader, and automated FBA reconciliation.
Its FAQ is unusually candid about the boundaries. Stock is tracked by warehouse, with no bin or zone level. Purchase orders can be created but only downloaded as PDFs, not emailed to suppliers. Forecasting includes lead times and inbound shipments, but seasonality is not yet available. There is no open API for external use. Valuation is FIFO, history reaches back 18 months, and implementation typically takes a few days.
Where ConnectBooks beats the other two: inventory depth on one subscription, and QuickBooks Desktop Enterprise as a target with five marketplaces included. A2X does not track stock. Webgility reaches Desktop Enterprise but prices channels separately above its included count.
The migration nobody scoped correctly
Sellers who left QuickBooks Commerce for a single replacement generally found they needed two. The pattern that works is picking based on which half of the old product you used.
If you used it mainly to get clean numbers into QuickBooks, A2X at $59 to $229 does that, and you keep managing stock wherever you already do.
If you used it for order routing, supplier POs, and wholesale, Webgility is the structural match, at $129 to $749 depending on your accounting platform and volume.
If you used it for inventory valuation, warehouse allocation, and landed cost, and you want that reaching a ledger, the inventory-first products are the fit.
None of the three restores the single-subscription experience. That product does not exist in the same shape anymore, and budgeting for one tool when you need two is the most common migration error.
The reconciliation problem underneath all of it
Whichever you pick, the mechanical work is the same: a settlement report contains a dozen transaction types, a deposit contains one number, and something has to reconcile them. A walkthrough of the manual version, covering settlement timing, fee categorization, refunds, and the pitfalls that break the math, sits at https://www.connectbooks.com/blog-posts/how-to-reconcile-amazon-to-quickbooks, and it is worth reading once even if you plan to automate it, because you cannot audit a tool doing a job you have never done by hand.
Two compliance points survive every tool choice. IRS Publication 538 states that a business required to account for inventory must use an accrual method for purchases and sales, with an exception for small business taxpayers averaging $26 million or less in gross receipts over the three prior tax years. And the IRS guidance on Form 1099-K confirms that marketplaces issue the form above $20,000 in more than 200 transactions, may issue it below that, and that income must be reported whether or not one arrives.
The tool changes. The reconciliation does not.
